Flagship Species with Confirmed Presence in Puerto Princesa City
| Scientific Name | Common Name | Status |
| MAMMALS | ||
| Amblonyx cinereus | Oriental small-clawed otter | Vulnerable, PalE |
| Restricted in Philippines-only in Palawan, local endemic (PalE) | ||
| Arctictis binturong* | Binturong | Vulnerable, PalE |
| Restricted in Philippines-only in Palawan, local endemic (PalE) | ||
| Eonycteris spelaea | Common nectar bat | Vulnerable, R |
| Hystrix pmila* | Palawan porcupine | Palawan only, PalE |
| Manis javanicus | Malayan pangolin | Seriously endangered, PalE |
| Mydaus marchei | Palawan stink badger | Vulnerable |
| Rhinolophus virgo | Yellow-faced horseshoe bat | Moderately common, PhilE |
| Sundasciurus juvencus | Northern Palawan three shrew | Endangered, widespread, Declining and heavily hunted |
| Sus barbatus | Bearded pig | Threatened, PalE |
| Tupaia palawanensis | Palawan tree shrew | Vulnerable |
| BIRDS | ||
| Aethopyga s. shelleyi | Lovely sunbird | E-LC |
| Alcedo meninting amadoni | Blue-eared Kingfisher | R-Un, race PalE |
| Anthracoceros marchei | Palawan Hornbill | E-Un, Vulnerable |
| Anthreptes malacensis paraguae | Plain –throated Sunbird | R-C, rare PalE |
| Arachnothera longirostra dilutior | Little Spiderhunter | R-Un, rare PalE |
| Batrachostomus javensis chaseni | Javan Frogmouth | R-Un, rare PalE |
| Caprimulgus macrurus johnsoni* | Large-tailed Nightjar | R-FC, rare PalE |
| Chloropsis palawanensis | Yellow-throated Leafbird | E-C |
| Chrysocolaptes lucidus erythrocephalus | Greater Flameback | R-FC, rare PalE |
| Cisticola juncidis nigrostriata | Zitting Cisticola | R-C rare PalE |
| Collocalia troglodytes | Pygmy Swiftlet | E-FC |
| Copsychus niger | White-vented Shama | E-Un, Near threatened |
| Coracina striata difficilis | Bar-bellied Cuckoo-shrike | R-C, rare PalE |
| Corvus enca pusillus | Slender-billed Crow | R-LC, rare E |
| Criniger bres frater | Grey-cheeked Bulbul | R-C, rare PalE |
| Culcicapa helianthea panayensis | Citrine Canary-flycatcher | R-C rare E |
| Cyornis lemrieri | Palawan blue Flycatcher | E-Un, Near Threatened |
| Dicaeum aeruginosum affine | Striped Flowerpecker | E-Un |
| Dicaeum pygmaeum palawanorum | Pygmy Flowerpecker | E-C |
| Dicrurus hottentotus palawanensis | Spangled Drongo | R-C, rare E |
| Dinopium javanense everetti | Common Flameback | R-Un rare PalE |
| Dryocopus javensis hargitti | White-bellied Woodpecker | R-FC , rare PalE |
| Eudynamis scolopacea mindanensis | Common Koel | R-C, rare E |
| Halcyon capensis gouldi* | Stork-billed Kingfisher | R-Un, rare E |
| Hypsipetes palawanensis | Sulphur-bellied Bulbul | E-Un |
| Irena puella tweeddalei | Asian Fairy-bluebird | R-C, rare PalE |
| Macronus gularis woodi | Striped Tit-babbler | R-C, rare PalE |
| Macropygia phasianella tenuirostris | Reddish Cuckoo-Dove | R-C, race E |
| Megalurus palustris forbesi | Striated Grassbird | R-C, race E |
| Nectarinia jugularis aurora | Olive-backed Sunbird | R-C, race E |
| Oriolus c. chinensis* | Black-naped Oriole | R-C, race E |
| Otus fuliginosus | Palawan Scops-Owl | E-Un, Near Threatened |
| Pachycephala grisola plateni | Mangrove Whistler | R-C, race PalE |
| Parus amabilis | Palawan Tit | E-Un, Near Threatened |
| Phylloscopus trivirgatus peterseni | Mountain Leaf-Warbler | R-C, race PalE |
| Pitta sordida palawanensis* | Hooded Pitta | R-C, race PalE |
| Polyplectron emphanum* | Palawan Peacock-Pheasant | E-Un, Vulnerable |
| Prioniturus platenae | Blue-headed Racquet-tail | E-Un, Vulnerable |
| Prionochilus p. plateni | Palawan Flowerpecker | E-C |
| Prionochilus plateni culionensis | Palawan Flowerpecker | E-C |
| Pycnonotus plumosus cinereifrons | Blue-winged Bulbul | R-FC, race PalE |
| Rhipidura javanica nigritorquis | Pied Fantail | R-C, race E |
| Sitta frontalis palawana | Velvet-fronted Nuthatch | R-C, race PalE |
| Spizaetus philippensis* | Philippine Hawk-Eagle | E-Un |
| Tanygnathus lucionensis salvadorii | Blue-naped Parrot | Near endemic- Uncommon, NearThreatened |
| Terpsiphone cyanescens | Blue Paradise-Flycatcher | E-Un, Near Threatened |
| Trichastoma cinereiceps | Ashy-headed Babbler | E-FC |
| AMPHIBIANS | ||
| Barbourula busuangensis | Philippine Discoglossid Frog | PalE/Rare, Threatened |
| Limnonectes acanthi | Palawan Common Frog | PalE |
| Rana moellendorffi | Moellendorff's Variable-backed Frog | Common, PalE |
| Bufo biporcatus | Philippine Toad | PalE/Rare |
| Rhacophorus e. everetti | Palawan Tree Frog | Rare, PalE |
| REPTILES | ||
| Varanus salvator | Philippine Monitor Lizard | Common, Threatened |
Source: Fauna Survey Report, 2005 ECAN Zoning Project